Bhupat and Jyoti Mehta School of Biosciences, Department of Biotechnology, Indian Institute of Technology (IIT) Madras, Chennai 600 036, India Centre for Integrative Biology and Systems mEdicine, IIT ...

Metabolite IDs should always be the ModelSEED/KBase ID rather than the current situation in which a BiGG ID can be used instead -- in retrospect this was the wrong decision, though at the time it ...

Department of BioSciences, Rice University, 6100 Main Street, MS-140, Houston, Texas 77005, United States Department of Earth, Environmental, and Planetary Sciences ...

The incidence and prevalence of inflammatory disorders have increased globally, and is projected to double in the next decade. Gut microbiome-based therapeutics have shown promise in ameliorating ...

1 Exobiology Branch, Space Science and Astrobiology Division, NASA Ames Research Center, Moffett Field, CA, United States 2 Department of Bioengineering, University of California, San Diego, La Jolla, ...

Standardization of data and models facilitates effective communication, especially in computational systems biology. However, both the development and consistent use of standards and resources remain ...

Mackinac combines the ability of ModelSEED to automatically reconstruct metabolic models with the advanced analysis capabilities in cobrapy to bridge the differences between the two frameworks.

Genome-scale metabolic models have proven to be valuable for predicting organism phenotypes from genotypes. Yet efforts to develop new models are failing to keep pace with genome sequencing. To ...